England kicking coach Alred will be absent from crunch clash at Eden Park after he and fitness specialist Paul Stridgeon were banned by the RFU for their part in the "ballgate" controversy.
Alred and Stridgeon were found to have illegally switched balls during England's 67-3 victory over Romania.
However Paterson believes the suspension is unlikely to have a negative affect on Wilkinson.
"Jonny's kicked for a long time," said Paterson.
"He'll understand his own kicking performance better than anyone, so I'm sure he'll be just fine.
"The kicking coach, along with all coaches, do their work throughout the week. I think there is a noticeable transfer to players taking ownership on matchday.
"I would just go through my normal routine.
"I'm quite lucky. I've worked with Duncan (Hodge, the Scotland kicking coach) and other coaches for a long time and I'd like to think I've built up a wee bit of knowledge myself.
"They're there as a reference, but it would be for me to go to them, rather the coach to approach you on a match day.
"Hopefully it wouldn't make too much difference."
Paterson, who had a 100 per cent success rate at the World Cup four years ago, has no complaints with the balls which have caused kickers a number of issues at the tournament.
He said: "We've trained with the balls since June or July and we get on and train with it.
"As long as they stay on the tee I'm trying my best, to be honest."
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